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Endpoints Index

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/admin

/apps

/coge

/favorites

/filesystem

/permanent-id-requests

/secured

/send-notification

/uuid

get

GET /

admin

GET /admin/apps/categories

GET /admin/apps/categories/search

POST /admin/apps/categories/{system-id}

DELETE /admin/apps/categories/{system-id}/{category-id}

PATCH /admin/apps/categories/{system-id}/{category-id}

DELETE /admin/apps/{app-id}/comments/{comment-id}

PATCH /admin/apps/{app-id}/comments/{comment-id}

GET /admin/apps/{app-id}/metadata

POST /admin/apps/{app-id}/metadata

PUT /admin/apps/{app-id}/metadata

DELETE /admin/filesystem/entry/{entry-id}/comments/{comment-id}

PATCH /admin/filesystem/entry/{entry-id}/comments/{comment-id}

GET /admin/filesystem/metadata/templates

POST /admin/filesystem/metadata/templates

DELETE /admin/filesystem/metadata/templates/{template-id}

POST /admin/filesystem/metadata/templates/{template-id}

GET /admin/notifications/system

PUT /admin/notifications/system

GET /admin/notifications/system-types

DELETE /admin/notifications/system/:uuid

GET /admin/notifications/system/:uuid

POST /admin/notifications/system/:uuid

GET /admin/ontologies

POST /admin/ontologies

DELETE /admin/ontologies/{ontology-version}

GET /admin/ontologies/{ontology-version}

POST /admin/ontologies/{ontology-version}

DELETE /admin/ontologies/{ontology-version}/{root-iri}

GET /admin/ontologies/{ontology-version}/{root-iri}

PUT /admin/ontologies/{ontology-version}/{root-iri}

GET /admin/ontologies/{ontology-version}/{root-iri}/apps

GET /admin/ontologies/{ontology-version}/{root-iri}/unclassified

GET /admin/permanent-id-requests

GET /admin/permanent-id-requests/{request-id}

POST /admin/permanent-id-requests/{request-id}/ezid

POST /admin/permanent-id-requests/{request-id}/status

DELETE /admin/workspaces

GET /admin/workspaces

apps

GET /apps/{app-id}/comments

POST /apps/{app-id}/comments

PATCH /apps/{app-id}/comments/{comment-id}

PATCH /apps/{app-id}/comments/{comment-id}

coge

GET /coge/genomes

POST /coge/genomes/load

POST /coge/genomes/{genome-id}/export-fasta

favorites

GET /favorites/filesystem

filesystem

PATCH /filesystem/entry/{entry-id}/comments/{comment-id}

permanent-id-requests

GET /permanent-id-requests

POST /permanent-id-requests

GET /permanent-id-requests/status-codes

GET /permanent-id-requests/types

GET /permanent-id-requests/{request-id}

secured

GET /secured/favorites/filesystem

DELETE /secured/favorites/filesystem/{favorite}

PUT /secured/favorites/filesystem/{favorite}

POST /secured/favorites/filter

GET /secured/fileio/download

POST /secured/fileio/save

POST /secured/fileio/saveas

POST /secured/fileio/upload

POST /secured/fileio/urlupload

POST /secured/filesystem/delete

POST /secured/filesystem/delete-contents

POST /secured/filesystem/delete-tickets

POST /secured/filesystem/directories

GET /secured/filesystem/directory

POST /secured/filesystem/directory/create

GET /secured/filesystem/display-download

GET /secured/filesystem/entry/{entry-id}/comments

POST /secured/filesystem/entry/{entry-id}/comments

PATCH /secured/filesystem/entry/{entry-id}/comments/{comment-id}

POST /secured/filesystem/exists

GET /secured/filesystem/file/manifest

GET /secured/filesystem/index

POST /secured/filesystem/list-tickets

POST /secured/filesystem/metadata/csv-parser

GET /secured/filesystem/metadata/template/attr/{attribute-id}

GET /secured/filesystem/metadata/template/{template-id}

GET /secured/filesystem/metadata/template/{template-id}/blank-csv

GET /secured/filesystem/metadata/template/{template-id}/guide-csv

GET /secured/filesystem/metadata/templates

POST /secured/filesystem/move

POST /secured/filesystem/move-contents

GET /secured/filesystem/paged-directory

[POST /secured/filesystem/path-list-creator](endpoints/filesystem/path-lists.md#ht-path-list-creator`

POST /secured/filesystem/read-chunk

POST /secured/filesystem/read-csv-chunk

POST /secured/filesystem/rename

[POST /secured/filesystem/restore](endpoints/filesystem/restore.md#restoring-a-file-or-directory-from-a-users-trash`

[POST /secured/filesystem/restore-all](endpoints/filesystem/restore.md#restoring-all-items-in-a-users-trash`

GET /secured/filesystem/root

POST /secured/filesystem/stat

POST /secured/filesystem/tickets

DELETE /secured/filesystem/trash

POST /secured/filesystem/user-permissions

GET /secured/filesystem/{data-id}/metadata

POST /secured/filesystem/{data-id}/metadata

[POST /secured/filesystem/{data-id}/metadata/copy](endpoints/filesystem/metadata.md#copying-all-metadata-from-a-filefolder`

POST /secured/filesystem/{data-id}/metadata/save

POST /secured/filesystem/{data-id}/ore/save

GET /secured/notifications/count-messages

POST /secured/notifications/delete

DELETE /secured/notifications/delete-all

GET /secured/notifications/last-ten-messages

POST /secured/notifications/mark-all-seen

GET /secured/notifications/messages

POST /secured/notifications/seen

POST /secured/notifications/system/delete

DELETE /secured/notifications/system/delete-all

POST /secured/notifications/system/mark-all-received

POST /secured/notifications/system/mark-all-seen

GET /secured/notifications/system/messages

GET /secured/notifications/system/new-messages

POST /secured/notifications/system/received

POST /secured/notifications/system/seen

GET /secured/notifications/system/unseen-messages

GET /secured/notifications/unseen-messages

GET /secured/oauth/access-code/{api-name}

DELETE /secured/preferences

GET /secured/preferences

POST /secured/preferences

DELETE /secured/sessions

GET /secured/sessions

POST /secured/sessions

send-notification

POST /send-notification.

uuid

GET /uuid